Wikipedia:Wikiproject Metabolic Pathways/templates

From Wikipedia, the free encyclopedia

This of is a list of templates useful for the wikiproject; see further below for the code for each template.

Templates available:

  • Reaction Templates:
  • Navigation Templates:
  • Reference Templates
  • Article Tags:
  • User Tags:
  • Infoboxes

Contents

[edit] Reaction templates

[edit] Enzymatic Reaction

Current status: Use. Complete and ready for use.

{{Enzymatic Reaction
|foward_enzyme=
|reverse_enzyme=
|substrate=
|product=
|reaction_direction_(forward/reversible/reverse)=
|minor_foward_substrate(s)=
|minor_foward_product(s)=
|minor_reverse_substrate(s)=
|minor_reverse_product(s)=
|substrate_image=
|product_image=
}}

Gives, for example:

Glucose Hexokinase Glucose-6-phosphate
image:Glucose_wpmp.png   image:Glucose-6-phosphate_wpmp.png
ATP ADP
 
 

[edit] Biochemical Reaction

Current status: Use. Complete and ready for use.

{{Biochemical Reaction
|reaction_A_major_substrate=
|reaction_A_major_substrate_image=
|reaction_A_foward_enzyme=
|reaction_A_reverse_enzyme=
|reaction_A_reaction_direction_(forward/reversible/reverse)=
|reaction_A_minor_reverse_product(s)=
|reaction_A_minor_reverse_substrate(s)=
|reaction_A_minor_foward_substrate(s)=
|reaction_A_minor_foward_product(s)=
|reaction_A_major_product=
|reaction_A_major_product_image=
|reaction_B_foward_enzyme=
|reaction_B_reverse_enzyme=
|reaction_B_reaction_direction_(forward/reversible/reverse)=
|reaction_B_minor_foward_substrate(s)=
|reaction_B_minor_foward_product(s)=
|reaction_B_minor_reverse_product(s)=
|reaction_B_minor_reverse_substrate(s)=
|reaction_B_major_product=
|reaction_B_major_product_image=
}}

Gives, for example:

Glucose Hexokinase Glucose 6-phosphate Phosphoglucose isomerase Fructose 6-phosphate
image:Glucose_wpmp.png   image:Glucose-6-phosphate_wpmp.png   image:Fructose-6-phosphate_wpmp.png
ATP ADP
   
    Phosphoglucose isomerase

[edit] Complex Enzymatic Reaction

Current status: Use. Complete and ready for use.

{{ Complex Enzymatic Reaction
|major_substrate_1=
|major_substrate_1_stoichiometric_constant=
|major_substrate_1_image=
|major_substrate_2=
|major_substrate_2_stoichiometric_constant=
|major_substrate_2_image=
|major_product_1=
|major_product_1_stoichiometric_constant=
|major_product_1_image=
|major_product_2=
|major_product_2_stoichiometric_constant=
|major_product_2_image=
|foward_enzyme=
|reverse_enzyme=
|reaction_direction_(forward/reversible/reverse)=
|minor_foward_substrate(s)=
|minor_foward_product(s)=
|minor_reverse_product(s)=
|minor_reverse_substrate(s)=
}}

Gives, for example:

A B E C D
NA image:A.png + NB Image:B.png NC Image:C.png + ND [[image:{{{major_product_2_image}}}]]
G H
image:Biochem_reaction_arrow_reversible_YYYY_horiz_med.png
I J
F

[edit] Complex Biochemical Reaction

Current status: Use. Complete and ready for use.

{{ Complex biochemical reaction
|reaction_A_major_substrate_1=
|reaction_A_major_substrate_1_image=
|reaction_A_major_substrate_1_stoichiometric_constant=
|reaction_A_major_substrate_2=
|reaction_A_major_substrate_2_image=
|reaction_A_major_substrate_2_stoichiometric_constant=
|reaction_A_foward_enzyme=
|reaction_A_reverse_enzyme=
|reaction_A_reaction_direction_(forward/reversible/reverse)=
|reaction_A_minor_reverse_product(s)=
|reaction_A_minor_reverse_substrate(s)=
|reaction_A_minor_foward_substrate(s)=
|reaction_A_minor_foward_product(s)=
|reaction_A_major_product_1=
|reaction_A_major_product_1_image=
|reaction_A_major_product_1_stoichiometric_constant=
|reaction_A_major_product_2=
|reaction_A_major_product_2_image=
|reaction_A_major_product_2_stoichiometric_constant=
|reaction_B_foward_enzyme=
|reaction_B_reverse_enzyme=
|reaction_B_reaction_direction_(forward/reversible/reverse)=
|reaction_B_minor_foward_substrate(s)=
|reaction_B_minor_foward_product(s)=
|reaction_B_minor_reverse_product(s)=
|reaction_B_minor_reverse_substrate(s)=
|reaction_B_major_product_1=
|reaction_B_major_product_1_image=
|reaction_B_major_product_1_stoichiometric_constant=
|reaction_B_major_product_2=
|reaction_B_major_product_2_image=
|reaction_B_major_product_2_stoichiometric_constant=
}}

Gives, for example:

A B G C D I E F
NA image:A.png + NB Image:B.png NC Image:C.png + ND [[image:{{{reaction_A_major_product_2_image}}}]] NE Image:E.png + NF Image:F.png
N O P Q
image:Biochem_reaction_arrow_reversible_YYYY_horiz_med.png image:Biochem_reaction_arrow_reversible_YYYY_horiz_med.png
L M R S
H J

[edit] Navigation templates

{{Glycolysis}}

 v • d • e 
Glycolysis Metabolic Pathway
Glucose Hexokinase Glucose-6-phosphate Glucose-6-phosphate isomerase Fructose 6-phosphate 6-phosphofructokinase Fructose 1,6-bisphosphate Fructose bisphosphate aldolase Dihydroxyacetone phosphate Glyceraldehyde 3-phosphate Triosephosphate isomerase Glyceraldehyde 3-phosphate Glyceraldehyde-3-phosphate dehydrogenase
ATP ADP ATP ADP NAD+ + Pi NADH + H+
+ 2
NAD+ + Pi NADH + H+
1,3-Bisphosphoglycerate Phosphoglycerate kinase 3-Phosphoglycerate Phosphoglycerate mutase 2-Phosphoglycerate Phosphopyruvate hydratase(Enolase) Phosphoenolpyruvate Pyruvate kinase Pyruvate Pyruvate dehydrogenase Acetyl-CoA
ADP ATP H2O ADP ATP CoA + NAD+ NADH + H+ + CO2
2 2 2 2 2 2
ADP ATP H2O

{{Citric acid cycle}}


v • d • e
Citric Acid Cycle Metabolic Pathway
Oxaloacetate Malate Fumarate Succinate Succinyl-CoA
Acetyl-CoA NADH + H+ NAD+ H2O FADH2 FAD CoA + ATP(GTP) Pi + ADP(GDP)
+ H2O NADH + H+ + CO2
CoA NAD+
H2O H2O NAD(P)+ NAD(P)H + H+ CO2
Citrate cis-Aconitate Isocitrate Oxalosuccinate α-Ketoglutarate


{{Urea cycle}}



 v • d • e 
Urea Cycle Metabolic Pathway
L-citrulline Carbamoyl
phosphate		 L-ornithine
Pi
L-aspartate Urea
+ ATP
PPi + AMP H2O
L-argininosuccinate Fumarate L-arginine


{{Metabolism}}

v • d • e
Metabolism

{{Protein biosynthesis}}

v • d • e
Protein biosynthesis
Biochemical Processes
Amino acid synthesis - tRNA synthesis
Molecular Biology Processes

{{Glucose metabolism}}

v • d • e
Basic topics in Glucose metabolism
Aerobic respiration
Anaerobic respiration
Glycolysis • Fermentation
Other metabolism
Diseases
Hormones

{{Metabolic pathways}}

 v • d • e 
All pathway labels on this image are links, simply click to access the article.
A high resolution labeled version of this image is available here.

[edit] Reference templates

{{KEGG enzyme|2.7.1.69}}

Enzyme 2.7.1.69 at KEGG Pathway Database.

{{KEGG compound|C00668}}

Compound C00668 at KEGG Pathway Database.

{{KEGG reaction|R00959}

Reaction R00959 at KEGG Pathway Database.

{{PDB enzyme|1A0S}}

PDB 1A0S

[edit] Common Minor Substrates/Products

H2O

H<sub>2</sub>O

CO2

CO<sub>2</sub>

Inorganic Phosphate: Pi

P<sub>i</sub>

ATP

ADP

CoA

[edit] Article tags

[edit] Stub Tag

Current status: Use. Complete and ready for use.

{{metabolism-stub}}

 This article about metabolism is a stub. You can help Wikipedia by expanding it.

[edit] Article of Interest

Current status: Use. Complete and ready for use.

For talk pages

{{Metabolic pathway|comment}}

This article is of interest to the Metabolic Pathways WikiProject.
You can help us improve and organize this article.
comment

[edit] User Tags

{{Wikipedia:Wikiproject Metabolic Pathways/Userbox}}

This user contributes to the Metabolic Pathways WikiProject


[edit] Infoboxes

[edit] Protbox

{{Protbox
|Name=
|Photo=
|Caption=
|HGNCid=
|Symbol=
|AltSymbols=
|Chromosome=
|Arm=
|Band=
|LocusSupplementaryData =
|Gene=
|Gene_type=
|Protein_length=
|Molecular_weight=
|Structure=
|Type=
|Functions=
|Domains=
|Motifs=
|Alternative_products=
|Catalytic_activity=
|Cofactors=
|Enzyme_regulation=
|Km=
|Vmax=
|Biophysicochemical_properties=
|Diseases=
|Pharmaceuticals=
|Biotechnology=
|Taxa=
|Cells=
|Location=
|Mods=
|Names=
|Pathways=
|Interactions=
|Actions=
|Agonists=
|Antagonists=
|Accession_numbers=
|EntrezGene=
|OMIM=
|RefSeq=
|UniProt=
|PDB=
|ECnumber=
|Codes=
|Review=
|Pages=
}}

[edit] Chembox

{{chemboxnew
|ImageFile=
|IUPACName=
|OtherNames=
|Abbreviations=
|Formula=
|MolarMass=
|CASNo=
|Density=
|Solubility=
|MeltingPt=
|BoilingPt=
|pKa=
|pKb=
|IsoelectricPt=
|DeltaHf=
|DeltaHc=
|EINECS=
|PubChem=
|SMILES=
|InChI=
}}