Haploview

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Haploview[1] is a commonly used bioinformatics software tool which is designed to analyze and visualize patterns of linkage disequilibrium in genetic data. Haploview also provides functionality for performing association studies, choosing tagSNPs[2] and estimating haplotype frequencies. Haploview is developed and maintained by Dr. Mark Daly's lab at the MIT/Harvard Broad Institute.

[edit] References

  1. ^ Barrett J.C., Fry B., Maller J., Daly M.J. (2005). "Haploview: analysis and visualization of LD and haplotype maps". Bioinformatics 21: 263–265. doi:10.1093/bioinformatics/bth457. PMID 15297300. 
  2. ^ de Bakker P. I., Yelensky R., Pe'er I., Gabriel S. B., Daly M. J., Altshuler D. (2005). "Efficiency and power in genetic association studies.". Nature Genetics 37: 1217–1223. doi:10.1038/ng1669. 

[edit] External links

Haploview Homepage