| Group |
Description |
| Acd |
Acd file utilities |
| Alignment consensus |
Merging sequences to make a consensus |
| Alignment differences |
Finding differences between sequences |
| Alignment dot plots |
Dot plot sequence comparisons |
| Alignment global |
Global sequence alignment |
| Alignment local |
Local sequence alignment |
| Alignment multiple |
Multiple sequence alignment |
| Display |
Publication-quality display |
| Edit |
Sequence editing |
| Enzyme kinetics |
Enzyme kinetics calculations |
| Feature tables |
Manipulation and display of sequence annotation |
| HMM |
Hidden markov model analysis |
| Information |
Information and general help for users |
| Menus |
Menu interface(s) |
| Nucleic 2d structure |
Nucleic acid secondary structure |
| Nucleic codon usage |
Codon usage analysis |
| Nucleic composition |
Composition of nucleotide sequences |
| Nucleic CpG islands |
CpG island detection and analysis |
| Nucleic gene finding |
Predictions of genes and other genomic features |
| Nucleic motifs |
Nucleic acid motif searches |
| Nucleic mutation |
Nucleic acid sequence mutation |
| Nucleic primers |
Primer prediction |
| Nucleic profiles |
Nucleic acid profile generation and searching |
| Nucleic repeats |
Nucleic acid repeat detection |
| Nucleic restriction |
Restriction enzyme sites in nucleotide sequences |
| Nucleic RNA folding |
RNA folding methods and analysis |
| Nucleic transcription |
Transcription factors, promoters and terminator prediction |
| Nucleic translation |
Translation of nucleotide sequence to protein sequence |
| Phylogeny consensus |
Phylogenetic consensus methods |
| Phylogeny continuous characters |
Phylogenetic continuous character methods |
| Phylogeny discrete characters |
Phylogenetic discrete character methods |
| Phylogeny distance matrix |
Phylogenetic distance matrix methods |
| Phylogeny gene frequencies |
Phylogenetic gene frequency methods |
| Phylogeny molecular sequence |
Phylogenetic tree drawing methods |
| Phylogeny tree drawing |
Phylogenetic molecular sequence methods |
| Protein 2d structure |
Protein secondary structure |
| Protein 3d structure |
Protein tertiary structure |
| Protein composition |
Composition of protein sequences |
| Protein motifs |
Protein motif searches |
| Protein mutation |
Protein sequence mutation |
| Protein profiles |
Protein profile generation and searching |
| Test |
Testing tools, not for general use |
| Utils database creation |
Database installation |
| Utils database indexing |
Database indexing |
| Utils misc |
Utility tools |
